Mechanically, the response factor computed from a standard — area per unit mass — assumes the standard and sample ionise identically, which is only true if they are treated identically.
Blank injections using only the mobile phase should give a clean baseline, and any peak in the blank is a contaminant that will affect your sample result.
In practice, a standard purchased from a supplier carries a certificate stating its purity, and that purity is your starting point for understanding your result.
The limitation is that a standard only establishes a baseline; it does not establish that your method is correct.
The practical summary: use a standard of declared purity and verified traceability, and check that the certificate is current.
edited 16 May 2025 by valentina_rossi — reworded for clarity after a comment